R packages by simonrio

GEmetrics - Best Linear Unbiased Prediction of Genotype-by-Environment Metrics

Provides functions to calculate the best linear unbiased prediction of genotype-by-environment metrics: ecovalence, environmental variance, Finlay and Wilkinson regression and Lin and Binns superiority measure, based on a multi-environment genomic prediction model.

Last updated 11 months ago

1.70 score 166 downloads

EpiTest - Test for Gene x Gene Interactions in Bi-Parental Populations

Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>, that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.

Last updated 2 years ago

1.00 score 227 downloads