R-universe - simonrio (Simon Rio)

AdmixPoly - Global and Local Admixture Inference in Polyploids

Provides functions to perform global (genome-wide) and local admixture inference from bi- and multi-allelic marker dosages (discrete or continuous) in polyploid species.

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3.00 score 1 stars 380 downloads

GEmetrics - Best Linear Unbiased Prediction of Genotype-by-Environment Metrics

Provides functions to calculate the best linear unbiased prediction of genotype-by-environment metrics: ecovalence, environmental variance, Finlay and Wilkinson regression and Lin and Binns superiority measure, based on a multi-environment genomic prediction model.

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1.70 score 244 downloads

EpiTest - Test for Gene x Gene Interactions in Bi-Parental Populations

Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>, that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.

Last updated

1.00 score 307 downloads