Package: EpiTest 1.0.0

EpiTest: Test for Gene x Gene Interactions in Bi-Parental Populations

Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>, that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.

Authors:Simon Rio [aut, cre], Tristan Mary-Huard [aut]

EpiTest_1.0.0.tar.gz
EpiTest_1.0.0.zip(r-4.7-any)EpiTest_1.0.0.zip(r-4.6-any)EpiTest_1.0.0.zip(r-4.5-any)
EpiTest_1.0.0.tgz(r-4.6-any)EpiTest_1.0.0.tgz(r-4.5-any)
EpiTest_1.0.0.tar.gz(r-4.7-any)EpiTest_1.0.0.tar.gz(r-4.6-any)
EpiTest_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EpiTest/json (API)

# Install 'EpiTest' in R:
install.packages('EpiTest', repos = c('https://simonrio.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Ancestry.list - Allele ancestries for the American maize NAM dataset
  • Parents - Phenotypes for parental lines of the American maize NAM dataset
  • Pheno.list - Phenotypes for the American maize NAM dataset

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 307 downloads 4 exports 36 dependencies

Last updated from:e663b3fb80. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK138
source / vignettesOK215
linux-releaseOK113
macos-releaseOK128
macos-oldrelOK235
windows-develOK102
windows-releaseOK75
windows-oldrelOK92
wasm-releaseOK102

Exports:%>%EpiTest.fitEpiTest.plotVarList.comp

Dependencies:clicorpcorcpp11dplyrfarvergenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixMM4LMMpillarpkgconfigpurrrR6RColorBrewerRcppRcppEigenrlangS7scalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr