{
  "_id": "6a1554e0acfb0bcc41d5d118",
  "Package": "EpiTest",
  "Title": "Test for Gene x Gene Interactions in Bi-Parental Populations",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(\"Simon\", \"Rio\", , \"simon.rio@cirad.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7014-8789\")),\nperson(\"Tristan\", \"Mary-Huard\", , \"tristan.mary-huard@agroparistech.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3839-9067\"))\n)",
  "Description": "Provides functions to test for gene x gene interactions in\na bi-parental population of inbred lines. The data are fitted\nwith the mixed linear model described in Rio et al. (2022)\n<doi:10.1101/2022.12.18.520958>, that accounts for gene x gene\ninteractions at both the fixed effect and variance levels. The\npackage also provides graphical tools to display the gene x\ngene interaction trend at the mean level and the variance\ncomponent analysis.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.1.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 08:03:23 UTC",
    "User": "root"
  },
  "Author": "Simon Rio [aut, cre] (<https://orcid.org/0000-0001-7014-8789>),\nTristan Mary-Huard [aut]\n(<https://orcid.org/0000-0002-3839-9067>)",
  "Maintainer": "Simon Rio <simon.rio@cirad.fr>",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://simonrio.r-universe.dev",
  "Date/Publication": "2022-12-20 11:30:02 UTC",
  "RemoteUrl": "https://github.com/cran/EpiTest",
  "RemoteRef": "HEAD",
  "RemoteSha": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
  "MD5sum": "68451b3accdb1f59c19f4c97bfbdca70",
  "_user": "simonrio",
  "_type": "src",
  "_file": "EpiTest_1.0.0.tar.gz",
  "_fileid": "0048e71b0f82233ce7695f3d6782dbfb8ad7eb3976d7f2bb192bba187bf7b67d",
  "_filesize": 244152,
  "_sha256": "0048e71b0f82233ce7695f3d6782dbfb8ad7eb3976d7f2bb192bba187bf7b67d",
  "_created": "2026-05-26T08:03:23.000Z",
  "_published": "2026-05-26T08:08:00.418Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77832336663,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7211893819"
    },
    {
      "job": 77832336658,
      "time": 144,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211893761"
    },
    {
      "job": 77832336726,
      "time": 162,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7211913646"
    },
    {
      "job": 77832336650,
      "time": 181,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211911740"
    },
    {
      "job": 77831904461,
      "time": 172,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211850012"
    },
    {
      "job": 77832336718,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211884285"
    },
    {
      "job": 77832336641,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7211880375"
    },
    {
      "job": 77832336660,
      "time": 99,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7211879938"
    },
    {
      "job": 77832336735,
      "time": 125,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211887862"
    }
  ],
  "_buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/EpiTest",
  "_commit": {
    "id": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
    "author": "Simon Rio <simon.rio@cirad.fr>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1671535802
  },
  "_maintainer": {
    "name": "Simon Rio",
    "email": "simon.rio@cirad.fr",
    "login": "simonrio",
    "description": "",
    "uuid": 74704960,
    "orcid": "0000-0001-7014-8789"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "MM4LMM",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "simonrio",
      "count": 1,
      "uuid": 74704960
    }
  ],
  "_userbio": {
    "uuid": 74704960,
    "type": "user",
    "name": "Simon Rio"
  },
  "_downloads": {
    "count": 170,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EpiTest"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EpiTest.html",
    "manual.pdf"
  ],
  "_realowner": "simonrio",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-12-20"
    }
  ],
  "_exports": [
    "%>%",
    "EpiTest.fit",
    "EpiTest.plot",
    "VarList.comp"
  ],
  "_datasets": [
    {
      "name": "Ancestry.list",
      "title": "Allele ancestries for the American maize NAM dataset",
      "object": "Ancestry.list",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "Parents",
      "title": "Phenotypes for parental lines of the American maize NAM dataset",
      "object": "Parents",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Genotype",
        "Family",
        "Weight",
        "GDD_DTS",
        "GDD_DTA",
        "GDD_ASI",
        "PH",
        "EH"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "Pheno.list",
      "title": "Phenotypes for the American maize NAM dataset",
      "object": "Pheno.list",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Ancestry.list",
      "title": "Allele ancestries for the American maize NAM dataset",
      "topics": [
        "Ancestry.list"
      ]
    },
    {
      "page": "EpiTest.fit",
      "title": "Inference and Test",
      "topics": [
        "EpiTest.fit"
      ]
    },
    {
      "page": "EpiTest.plot",
      "title": "Display variance component or directional epistasis graphs",
      "topics": [
        "EpiTest.plot"
      ]
    },
    {
      "page": "EpiTest.plot.mean",
      "title": "Display directional epistasis plot",
      "topics": [
        "EpiTest.plot.mean"
      ]
    },
    {
      "page": "EpiTest.plot.var",
      "title": "Display variance component graphs",
      "topics": [
        "EpiTest.plot.var"
      ]
    },
    {
      "page": "Parents",
      "title": "Phenotypes for parental lines of the American maize NAM dataset",
      "topics": [
        "Parents"
      ]
    },
    {
      "page": "pchisqmix",
      "title": "Chi-Squared Mixtures Distribution Function",
      "topics": [
        "pchisqmix"
      ]
    },
    {
      "page": "Pheno.list",
      "title": "Phenotypes for the American maize NAM dataset",
      "topics": [
        "Pheno.list"
      ]
    },
    {
      "page": "VarList.comp",
      "title": "Compute covariance matrices",
      "topics": [
        "VarList.comp"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "corpcor",
    "cpp11",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MM4LMM",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "epitest",
  "_universes": [
    "simonrio"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-26T08:05:27.000Z",
      "distro": "noble",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "326d22fdd1d18510ada4251cadb0756d7e534e45c9c22dca3d2871881371940a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-26T08:05:28.000Z",
      "distro": "noble",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "cdb699ffff1617007bf5e7cca9e192eb55404256e7fd7cc09aafb771311d2740",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-26T08:06:50.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "7dec66d1fb4fa40e4a7c605bb4933c478e4179fac6751ab38dbc7eccb5a57469",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-05-26T08:06:23.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "099ab41e773de22ed0f19fee0f5311d34b6b1b0b63f080f2c0f0f51b597752d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-26T08:05:37.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "053d4670c0d0a4c599be9a6287b7790ac1923217d4fc9a291561cfc2df4a55c7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-26T08:04:40.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "66546eee43769399d6d58516fd049fc8d5ea81d3df6111151d02af8c6f581d4a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-26T08:04:36.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "7fc3ef27ede633ccf42d69eab60ba934beb47f56d9b8f017660dcb13fa59715b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-05-26T08:04:58.000Z",
      "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2",
      "fileid": "4c96a21a90b95748c6a0803102cbdcec18597f1e464a558afefcb7f4743ac8b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/simonrio/actions/runs/26440006362"
    }
  ]
}