{ "_id": "6aca5642fe5cc25786e877ed", "Package": "EpiTest", "Title": "Test for Gene x Gene Interactions in Bi-Parental Populations", "Version": "1.0.0", "Authors@R": "c(\nperson(\"Simon\", \"Rio\", , \"simon.rio@cirad.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7014-8789\")),\nperson(\"Tristan\", \"Mary-Huard\", , \"tristan.mary-huard@agroparistech.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-3839-9067\"))\n)", "Description": "Provides functions to test for gene x gene interactions in\na bi-parental population of inbred lines. The data are fitted\nwith the mixed linear model described in Rio et al. (2022)\n, that accounts for gene x gene\ninteractions at both the fixed effect and variance levels. The\npackage also provides graphical tools to display the gene x\ngene interaction trend at the mean level and the variance\ncomponent analysis.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 14:32:32 UTC", "User": "root" }, "Author": "Simon Rio [aut, cre] (),\nTristan Mary-Huard [aut]\n()", "Maintainer": "Simon Rio ", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://simonrio.r-universe.dev", "Date/Publication": "2022-12-20 11:30:02 UTC", "RemoteUrl": "https://github.com/cran/EpiTest", "RemoteRef": "HEAD", "RemoteSha": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "_user": "simonrio", "_type": "src", "_file": "EpiTest_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/d2faed4664488995ec4815169b83ac7c8c76fcca25b513a9b4daefe2a6dedb2e", "_filesize": 245457, "_sha256": "d2faed4664488995ec4815169b83ac7c8c76fcca25b513a9b4daefe2a6dedb2e", "_expires": "2027-01-18T15:14:08.000Z", "_created": "2026-10-10T14:32:32.000Z", "_published": "2026-10-10T15:14:10.197Z", "_buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114236340065, "time": 138, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11672403522" }, { "job": 114236340046, "time": 113, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11672423376" }, { "job": 114236339994, "time": 235, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11673308694" }, { "job": 114236339928, "time": 128, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11673323304" }, { "job": 114235612062, "time": 215, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11672203612" }, { "job": 114236339996, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11672678161" }, { "job": 114236340062, "time": 102, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11672438404" }, { "job": 114236340041, "time": 92, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11673240684" }, { "job": 114236339995, "time": 75, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11672463130" } ], "_upstream": "https://github.com/cran/EpiTest", "_commit": { "id": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "author": "Simon Rio ", "committer": "cran-robot ", "message": "version 1.0.0\n", "time": 1671535802 }, "_maintainer": { "name": "Simon Rio", "email": "simon.rio@cirad.fr", "login": "simonrio", "description": "", "uuid": 74704960, "orcid": "0000-0001-7014-8789" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "MM4LMM", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "simonrio", "count": 1, "uuid": 74704960 } ], "_userbio": { "uuid": 74704960, "type": "user", "name": "Simon Rio", "followers": 2 }, "_downloads": { "count": 307, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EpiTest" }, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/EpiTest.html", "extra/manual.pdf" ], "_realowner": "simonrio", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2022-12-20" } ], "_exports": [ "%>%", "EpiTest.fit", "EpiTest.plot", "VarList.comp" ], "_datasets": [ { "name": "Ancestry.list", "title": "Allele ancestries for the American maize NAM dataset", "object": "Ancestry.list", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Parents", "title": "Phenotypes for parental lines of the American maize NAM dataset", "object": "Parents", "class": [ "data.frame" ], "fields": [ "Genotype", "Family", "Weight", "GDD_DTS", "GDD_DTA", "GDD_ASI", "PH", "EH" ], "rows": 4, "table": true, "tojson": true }, { "name": "Pheno.list", "title": "Phenotypes for the American maize NAM dataset", "object": "Pheno.list", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "Ancestry.list", "title": "Allele ancestries for the American maize NAM dataset", "topics": [ "Ancestry.list" ] }, { "page": "EpiTest.fit", "title": "Inference and Test", "topics": [ "EpiTest.fit" ] }, { "page": "EpiTest.plot", "title": "Display variance component or directional epistasis graphs", "topics": [ "EpiTest.plot" ] }, { "page": "EpiTest.plot.mean", "title": "Display directional epistasis plot", "topics": [ "EpiTest.plot.mean" ] }, { "page": "EpiTest.plot.var", "title": "Display variance component graphs", "topics": [ "EpiTest.plot.var" ] }, { "page": "Parents", "title": "Phenotypes for parental lines of the American maize NAM dataset", "topics": [ "Parents" ] }, { "page": "pchisqmix", "title": "Chi-Squared Mixtures Distribution Function", "topics": [ "pchisqmix" ] }, { "page": "Pheno.list", "title": "Phenotypes for the American maize NAM dataset", "topics": [ "Pheno.list" ] }, { "page": "VarList.comp", "title": "Compute covariance matrices", "topics": [ "VarList.comp" ] } ], "_rundeps": [ "cli", "corpcor", "cpp11", "dplyr", "farver", "generics", "ggplot2", "ggrepel", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "MM4LMM", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_score": 1, "_indexed": true, "_nocasepkg": "epitest", "_universes": [ "simonrio" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-10-10T14:34:52.000Z", "distro": "resolute", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/c909034c6419d1e28b2c4c0e0c258f85336b2b4392ca4962527e55e242948ccc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-10-10T14:34:44.000Z", "distro": "resolute", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/a63fc3ad58de3441873366d3ed3f05bd44268b3ec2d36c0a77089f925edabf05", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-10-10T15:12:18.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/a9c049592530edc372cad1d03849093aed317183ffe6770b262515da21f36de2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0", "date": "2026-10-10T15:10:10.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/c1b15b6fd743e4de5a71a171dd9996a441d7c38f2cadfdacc69281bd21d9042a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-10-10T14:34:58.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/88ad4ac35a721c87ecf0850da9ff29ec8a4bc5e2008149d5dfe897110ea56883", "status": "success", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-10-10T14:34:07.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/0632b93e31c70e402acc72753be327befe62eac3b27613da0c1467165f0d5c64", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-10-10T14:34:02.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/381bf91eceda3ba3e0ce749900f688864f9f45ba7587d83189d242fa8052cdc4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-10-10T14:34:02.000Z", "commit": "e663b3fb8086ea626842c8ddef026a1877e7dbe2", "fileid": "https://r2.ropensci.org/fd80905b288e22277bfe87f6ced7913effb0e8c1c5ef756a02bfa5b1aee326c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/simonrio/actions/runs/38059796555" } ] }